Publications

Lino FSO, Bajić D, Vila JCC, Sanchez A, Sommer MOA# (2021) Complex yeast-bacteria interactions shape the yield of industrial ethanol fermentations.
Nature Communications (Accepted) (preprint)

Dukovski I*, Bajić D*, Chacón JM*, Quintin M*, Vila JCC, Sulheim S, Pacheco AR, Bernstein D, Korolev K, Sanchez A, Harcombe WD, Segrè D # (2020) Computation Of Microbial Ecosystems in Time and Space (COMETS): An open source collaborative platform for modeling ecosystems metabolism. Submitted;
arXiv (preprint)

Kovács K*, Farkas Z*, Bajić D*, Kalapis D, Kintses B, Notebaart RA, Poyatos JF, Kemmeren P, Holstege FCP, Pál C, Papp B# (2020) Suboptimal global transcriptional response increases the harmful effects of loss-of-function mutations in yeast.
Molecular Biology and Evolution, msaa280 (https://doi.org/10.1093/molbev/msaa280).

Chang C*, Osborne ML*, Bajić, D & Sanchez A# (2020) Artificially selecting microbial communities using propagule strategies.
Evolution 74:10, 2392-2403 (https://doi.org/10.1101/2020.05.01.066282)

Estrela S, Vila JCC, Lu N, Bajić D, Rebolleda-Gomez M, Chang CY, Sanchez A # (2020) Metabolic rules of microbial community assembly.
BioRxiv (https://doi.org/10.1101/2020.03.09.984278)

Bajić D, Sanchez A# (2020) The ecology and evolution of microbial metabolic strategies.
Current Opinion in Biotechnology, 62:123–128 [Article]

Sanchez-Gorostiaga A*, Bajić D*, Osborne ML, Poyatos JF, Sanchez A# (2019) High order interactions dominate the functional landscape of microbial consortia.
PLoS Biology 17(12): e3000550 [Article] [PDF] [Supplement]

Alonso-Lavin AJ, Bajić D, Poyatos J.F#. (2019) Tolerance to NADH/NAD+ imbalance anticipates aging and anti-aging intervention. bioRxiv (https://doi.org/10.1101/719401)

Bajić D*#, Vila JCC*, Blount ZD, Sanchez A# (2018) On the deformability of an empirical adaptive landscape by microbial evolution.
PNAS (2018) 115(44):11286-11291 [Article] [PDF] [Supplement]

Goldford, J*, Lu, N*, Bajić D, Estrela S, Sanchez-Gorostiaga A, Tikhonov M, Segrè D, Mehta P#, Sanchez, A# (2018) Emergent simplicity in microbial community assembly.
Science (2018) 361:469-74 [Article] [PDF] [Supplement]

Rodrigo G, Bajić D, Elola I, Poyatos JF# (2017) Deconstructing a multiple antibiotic resistance regulation through the quantification of its input function.
NPJ Systems Biology and Applications 3: Article number: 30 [Article] [PDF][Supplement]

Rodrigo G, Bajić D, Elola I, Poyatos JF# (2016) Antagonistic autoregulation speeds up a homogeneous response in Escherichia coli.
Scientific Reports 6: Article number: 36196 [Article] [PDF] [Supplementary]

Bajić D*, Moreno-Fenoll C, Poyatos JF# (2014) Rewiring of genetic networks in response to modification of genetic background.
Genome biology and evolution 6 : 3267–3280 [Article] [PDF] [Supplement]

Bajić D, Poyatos JF# (2012) Balancing noise and plasticity in eukaryotic gene expression.
BMC Genomics 13: 343 [Article] [PDF] [Supplement]

Book chapters

Guantes R, Aguirre J, Bajić D (2014) Biologia de Sistemas. in: Bioinformática con Ñ. Coordinators: Sebastián, A. and Pascual-García, A. Independent edition. Free access in Zenodo.